29.2 Thin Layer (TLC) and Paper Chromatography (PC)

Learning Objectives

By the end of this section, you will be able to:

  • Describe the purpose and procedure of paper chromatography.
  • Calculate the Rf value.
  • Describe the purpose and procedure of thin layer chromatography.

Paper Chromatography (PC)

In paper chromatography, the stationary phase is a very uniform absorbent paper. The mobile phase is a suitable liquid solvent (typically, water) or mixture of solvents. Here’s a quick paper chromatography experiment you can try at home using water soluble markers (or food colouring), paper towel (or coffee filter) and water.

Watch Marker Pen Chromatography – FLEET Centre Home Science on YouTube (2 mins)

Video source: FLEET Centre. (2018, February 11). Marker pen chromatography – FLEET Centre Home Science [Video]. YouTube.

Setting up a Paper Chromatography Experiment

Suppose you have three blue pens, and you want to find out which one was used to write a message. Samples of each ink are spotted on to a pencil line drawn on a sheet of chromatography paper. Some of the ink from the message is dissolved in the minimum possible amount of a suitable solvent, and that is also spotted onto the same line. In Figure 29.2a., the pens are labeled 1, 2 and 3, and the message ink as M.

An image showing the setup of paper chromatography. Vertical rectangle of paper with horizontal line near bottom. Four equally spaced dots labelled M, 1, 2, 3.
Figure 29.2a. Setup of paper chromatography (credit: Chromatography , CC BY-NC 4.0).

The paper is suspended in a container with a shallow layer of a suitable solvent or mixture of solvents in it. It is important that the solvent level is below the line with the spots on it. The Figure 29.2b. doesn’t show details of how the paper is suspended because there are multiple ways of doing it.

The reason for covering the container is to make sure that the atmosphere in the beaker is saturated with solvent vapour. Saturating the atmosphere in the beaker with vapour stops the solvent from evaporating as it rises up the paper.

An image showing the placement of solvent in paper chromatography. Vertical paper with line in beaker with lid. Solvent touches paper but is below the marked line.
Figure 29.2b. Placement of solvent in paper chromatography (credit: Chromatography , CC BY-NC 4.0).

As the solvent slowly travels up the paper, the different components of the ink mixtures travel at different rates and the mixtures are separated into different coloured spots. Figure 29.2c. shows what the plate might look like after the solvent has moved almost to the top.

An image showing the paper chromatography result after solvent (mobile phase) moves. Solvent reaches close to top of paper. M mark separated into light blue dot close to bottom and dark blue longer dot midway up. 1 mark separates into dark blue dot 1/3 way up and dark blue dot at solvent line. 2 mark separates into light blue dot close to bottom and dark blue longer dot mid way up. 3 mark shows dark blue dot about 1/3 way up.
Figure 29.2c. Paper chromatography result after solvent (mobile phase) moves (credit: Chromatography , CC BY-NC 4.0).

It is fairly easy to see from the final result that the pen that wrote the message contained the same dyes as pen 2. You can also see that pen 1 contains a mixture of two different blue dyes – one of which might be the same as the single dye in pen 3.

Rf values

Some compounds in a mixture travel almost as far as the solvent does; some stay much closer to the base line. The distance travelled relative to the solvent is a constant for a particular compound as long as you keep everything else constant – the type of paper and the exact composition of the solvent, for example.

The distance travelled relative to the solvent is called the Rf value. For each compound it can be worked out using the formula:

The formula for calculating the Rf value. Rf is the distance travelled by compound in relation to the distance travelled by the solvent.
(credit: Chromatography , CC BY-NC 4.0).

Example 29.2a

Calculate the Rf value for a paper chromatography result if one component of a mixture travelled 9.6 cm from the base line while the solvent had travelled 12.0 cm.

Solution

The Rvalue for that component is:

(credit: Chromatography , CC BY-NC 4.0).

In the example we looked at with the various pens, it wasn’t necessary to measure Rf values because you are making a direct comparison just by looking at the result.

You are making the assumption that if you have two spots in the final result which are the same colour and have travelled the same distance up the paper, they are most likely the same compound. It isn’t necessarily true of course – you could have two similarly coloured compounds with very similar Rf values.

In some cases, it is possible to see the results of paper chromatography because the spots are coloured.  Other times, the spots may not be visible. However, it may be possible to make the spots visible by reacting them with something which produces a coloured product.  In Figure 29.2d., a paper chromatography experiment is run with different amino acids.  After the experiment is run, the paper is sprayed with a solution of ninhydrin. Ninhydrin reacts with amino acids to give coloured compounds, mainly brown or purple.

Two images. The left-hand diagram shows the paper after the solvent front has almost reached the top. The spots are still invisible. The second diagram on the right shows what it might look like after spraying with ninhydrin. The spots appear in the second diagram.
Figure 29.2d. The left-hand diagram shows the paper after the solvent front has almost reached the top. The spots are still invisible. The second diagram shows what it might look like after spraying with ninhydrin (credit: Chromatography , CC BY-NC 4.0).

Two-way paper chromatography gets around the problem of separating out substances which have very similar Rf values (Figure 29.2e.). A single spot of mixture placed towards one end of the base line. It is stood in a solvent as before and left until the solvent front gets close to the top of the paper. Once dried, the paper is rotated through 90°, and developed again in a different solvent. The spots will separate as the compounds will interact differently with the new mobile phase.

 

The image shows the chromatography process of separating substances on a two way paper
Figure 29.2e. Two-way paper chromatography.  a) single dot of sample is placed at M and run with first solvent.  b) after drying, the paper is rotated and run with second solvent. c) End result showing the separated sample (credit: Chromatography , CC BY-NC 4.0).

Thin Layer Chromatography (TLC)

Thin layer chromatography (TLC) is done exactly as it says – using a thin, uniform layer of silica gel or alumina coated onto a piece of glass, metal or rigid plastic. The silica gel (or the alumina) is the stationary phase. The stationary phase for thin layer chromatography also often contains a substance which fluoresces in UV light. The mobile phase is a suitable liquid solvent or mixture of solvents.

Thin layer chromatography is very similar to paper chromatography in how it is setup, run and analyzed (Figure 29.2f.). Pencil is used to draw the starting line (not ink).  The sample spot is allowed to dry before placing in the beaker.  The beaker is covered to ensure the solvent vapour fills the beaker and doesn’t escape (especially important when using highly volatile solvents) allowing the solvent to travel up the plate and not evaporate. The solvent level is below that of the sample spot.

An image showing the setup of TLC with thin layer chromatorgraphy plate in a beaker with a watch glass on top. The pencil line is on the plate near the bottom and the solvent touches the plate below the pencil line. The spot of mixture is located on the pencil line.
Figure 29.2f. Setup of TLC (thin layer chromatography) (credit: Chromatography, CC BY-NC 4.0).

As the solvent slowly travels up the plate, the different components of the dye mixture travel at different rates and the mixture is separated into different coloured spots. Figure 29.2g. shows the plate after the solvent has moved about halfway up it. The solvent is allowed to rise until it almost reaches the top of the plate. That will give the maximum separation of the dye components for this particular combination of solvent and stationary phase.

An image showing a TLC experiment about halfway through mobile phase movement. The M spot has separated into three vertically spaced out dots of different colours all below the solvent line which is about half way up plate.
Figure 29.2g. TLC experiment about halfway through mobile phase movement (credit: Chromatography, CC BY-NC 4.0).

The resulting TLC separation in then analyzed.  If you wanted to know is how many different components made up the mixture, it could be determined visually. However, Rf measurements are often taken from the plate in order to help identify the compounds present. These measurements, as with paper chromatography, are the distance traveled by individual spots divided by the distance traveled by the solvent. When the solvent front gets close to the top of the plate, the plate is removed from the beaker and the position of the solvent is marked with another line before it has a chance to evaporate.

Exercise 29.2a

In this TLC experiment, three dots of purple ink are placed on the base line (1).  The TLC is exposed to solvent and the solvent front is allowed to reach the top of the plate (line 4).  After drying, the distance the red (3) and blue (2) dots travelled are recorded.  Calculate the Rf value for each coloured dot using these values.  (1) is at 0.0 cm, (2) is at 1.9 cm.  (3) is at 4.7 cm and (4) is 6.1 cm.

A mixture is added to the base line (1) shown as purple spots. The TLC plate is placed in a solvent tank and the solvent moves up the plate. A lid ensures that the atmosphere in the tank is saturated with solvent. As the solvent moves up the plate the purple mixture separates into a fast moving red spot and a slower moving blue spot. The Rf of each spot is worked out by measuring the distance the spot moved relative to the distance the solvent moved i.e. for the red spot the Rf is = (1 to 3 / 1 to 4) and for the blue spot the Rf is = (1 to 2 / 1 to 4). The Rf of the red spot is larger, meaning that it has moved further along the plate (in that solvent) than has the blue spot. In this case it can be seen that the purple spot can be separated easily into 2 spots using the light blue solvent.
(Credit: Image by Shakiestone, edited by Quantockgoblin, Public Domain)

Check Your Answer:[1]

If you could repeat this experiment under exactly the same conditions, then the Rf values for each component would always be the same. However, if anything changes (the temperature, the exact composition of the solvent, and so on), that is no longer true.

If the components of the mixture being separated are not visible (colourless), they can be spotted using fluorescence (hence the UV fluorescent compound in the TLC coating). The TLC plate will glow under UV light and the glow is masked at the position where the spots are. The spots show up as darker patches (Figure 29.2h.). Using pencil while under UV light, these spots can be marked on the plate for analysis.  Exposing the TLC plate to chemicals may also allow the spots to be seen (see Figure 29.2d.).

An image showing a TLC plate glowing under UV light with the separate components as dull dots
Figure 29.2h. TLC plate glowing under UV light with the separate components as dull dots (credit: Chromatography, CC BY-NC 4.0).

The TLC process relies on physical differences between the stationary and mobile phases and the components of the sample being tested.  As the solvent (mobile phase) begins to soak up the TLC plate (stationary phase), it first dissolves the compounds in the spot on the base line. The compounds present will then tend to get carried up the chromatography plate as the solvent continues to move upwards. How fast the compounds get carried up the plate depends on two things:

  • How soluble the compound is in the solvent. This will depend on how much attraction there is between the molecules of the compound and those of the solvent.
  • How much the compound sticks (adsorb) to the stationary phase – the silica gel or alumina. This will depend on how much attraction there is between the molecules of the compound and the silica gel.

Adsorption isn’t permanent – there is a constant movement of a molecule between being adsorbed onto the silica gel surface and going back into solution in the solvent. Obviously, the compound can only travel up the plate during the time that it is dissolved in the solvent. While it is adsorbed on the silica gel, it is temporarily stopped – the solvent is moving on without it. That means that the more strongly a compound is adsorbed, the less distance it can travel up the plate.

Attribution & References

Except where otherwise noted, this page was adapted by Samantha Sullivan Sauer from

  1. Red Rf = 0.77, Blue Rf = 0.31

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Organic and Biochemistry Supplement to Enhanced Introductory College Chemistry Copyright © 2024 by Gregory Anderson; Caryn Fahey; Adrienne Richards; Samantha Sullivan Sauer; David Wegman; and Jen Booth is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License, except where otherwise noted.

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