References

(1) AddGene Plasmid Guide. http://www.addgene.org/plasmid_reference/ (accessed July 11, 2016). 

(2) Competent Cell Compendium: Tools and Tips for Successful Transformations, Sigma. http://www.sigmaaldrich.com/content/dam/sigma-aldrich/life-science/cloning-and-expression/compcellscompend.pdf (accessed July 11, 2016). 

(3) Purelink PCR purification manual. http://products.invitrogen.com/ivgn/product/K220001(accessed July 11, 2016). 

(4) AddGene, Plasmid Guide, DNA Ligation. http://www.addgene.org/plasmid_protocols/DNA_ligation/ (accessed July 11, 2016). 

(5) Hanahan, D. 1983. Studies on transformation of Escherichia coli with plasmids. J.Mol.Biol. 1983, 166:557-580. 

(6) Taylor, R. G.; Walker, D. C.; McInnes, R. R. E. coli host strains significantly affect the quality of small scale plasmid DNA preparations used for sequencing. Nucleic Acids Res. 1993, 21, 1677 -1678. 

(7) Cunningham, B.A. Most Competent for the Job. The Scientist.2001, 15, 22-23. 

(8) Bertani, G. Studies on Lysogenesis. I. The mode of phage liberation by lysogenic Escherichia coli. J. Bacteriology. 1952, 62, 293-300. 

(9) Bertani, G. 2004. Lysogeny at mid-twentieth century: P1, P2, and other experimental systems.” J Bacteriology. 2004, 186, 595-600. 

(10) Baev, M. V.; Baev, D.; Radek, A. J.; Campbell, J. W. Growth of Escherichia coli MG1655 on LB medium: determining metabolic strategy with transcriptional microarrays. Appl Microbiol Biotechnol. 2006, 71, 323-328. 

(11) Baev, M. V.; Baev, D.; Radek, A. J.; Campbell, J. W. Growth of Escherichia coli MG1655 on LB medium: monitoring utilization of sugars, alcohols, and organic acids with transcriptional microarrays. Appl Microbiol Biotechnol. 2006, 71 310-6. 

(12) Baev, M. V.; Baev, D.; Radek, A. J.; Campbell, J. W. Growth of Escherichia coli MG1655 on LB medium: monitoring utilization of amino acids, peptides, and nucleotides with transcriptional microarrays. Appl Microbiol Biotechnol. 2006, 71 317-22. 

(13) Sambrook, J.; Russell, D. W. Molecular Cloning. A Laboratory Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.; 2001. 

(14) Bolivar, F.; Rodriguez, R. L.; Green, P. J.; Betlach, M. C.; Heyneker, H. L.; Boyer, H. W.; Crosa, J. H.; Falkow, S. Construction and characterization of new cloning vehicles. II. A multipurpose cloning system. Gene. 1977, 2, 95-113. 

(15) Balbas, P.; Soberon, X.; Merino, E.; Zurita, M.; Lomeli, H.; Valle, F.; Flores, N.; Bolivar, F. Plasmid vector pBR322 and its special purpose derivatives – A review. Gene. 1986, 50, 3-40. 

(16) Noller, H. F. Structure of ribosomal RNA. Annu. Rev. Biochem. 1984, 53, 119-162. 

(17) OpenWetWare E. coli genotypes. http://openwetware.org/wiki/E._coli_genotypes (accessed July 11, 2013). 

(18) Durfee, T.; Nelson, R.; Baldwin, S.; Plunkett, G.; Burland, V.; Mau, B.; Petrosino, J. F.; Qin, X.; Muzny, D. M.; Ayele, M.; Gibbs, R. A.; Csorgo, B.; Posfai, G.; Weinstock, G. M.; Blattner, F. R. The Complete Genome Sequence of Escherichia coli DH10B: Insights into the Biology of a Laboratory Workhorse. J. Bact. 2008, 190, 2597-2606. 

(19) Bachmann, B.J. 1972. Pedigrees of some mutant strains of Escherichia coli K-12. Bacteriol. Rev. 1972, 36 525-557. (20)U. S. environmental protection agency. E. coli K-12 derivatives final risk assessment. http://epa.gov/oppt/biotech/pubs/fra/fra004.htm (accessed July 11, 2016). 

(20) Hanahan, D. (1983). Studies on transformation of Escherichia coli with plasmids. Journal of molecular biology, 166(4), 557-580.

Other references of interest:

a. Cohen, S. N.; Chang, A. C. Y.; Hsu, L. Nonchromosomal Antibiotic Resistance in Bacteria: Genetic Transformation of Escherichia coli by R-Factor DNA. Proc Natl Acad Sci U S A. 1972, 69, 2110–2114. 

b. Yoshida, N.; Sato, M. Plasmid uptake by bacteria: a comparison of methods and efficiencies. Appl Microbiol Biotechnol. 2009, 83 

c. Hanahan, D. DNA Cloning: A Practical Approach, ed. Glover, D.M., ed., Vol. 1, IRL Press,McLean, Virginia,; 1985; pp.109. 

d. Inoue, H.; Nojima, H.; Okayama, H. High efficiency transformation of Escherichia coli with plasmids. Gene. 1990, 96, 23-28. 

e. Hayashi, K.; Morooka, N.; Yamamoto, Y.; Fujita, K.; Isono, K.; Choi, S.; Ohtsubo, E.; Baba, T.; 

f. Wanner, B. L.; Mori, H.; Horiuchi, T. (2006) “Highly accurate genome sequences of Escherichia coli 

g. K- 12 strains MG1655 and W3110. Mol. Syst. Biol. 2006, 2, 1-5.